Tóth, K., & Stacey, G. (2015). Does plant immunity play a critical role during initiation of the legume-rhizobium symbiosis? Frontiers in Plant Science, 6, 401. http://doi.org/10.3389/fpls.2015.00401

Hossain, M. S., Joshi, T., & Stacey, G. (2015). System approaches to study root hairs as a single cell plant model: current status and future perspectives. Frontiers in Plant Science, 6, 363. http://doi.org/10.3389/fpls.2015.00363

Yan Z., Hossain M.S., Valdés-López O., Hoang N.T., Zhai J., Wang J., Libault M., Brechenmacher L., Findley S., Joshi T., Qiu L., Sherrier D.J., Ji T., Meyers B.C., Xu D. and Stacey G. (2015) Identification and functional characterization of soybean root hair microRNAs expressed in response to Bradyrhizobium japonicum infection. Plant Biotechnol. J., doi: 10.1111/pbi.12387

Tanaka, K., Cho, S.-H., Lee, H., Pham, A. Q., Batek, J. M., Cui, S., … Stacey, G. (2015). Effect of lipo-chitooligosaccharide on early growth of C4 grass seedlings. Journal of Experimental Botany, 66(19), 5727–5738. http://doi.org/10.1093/jxb/erv260

Benjamin Gourion, FathiBerrabah, Pascal Ratet and Gary Stacey (2014) Rhizobium-legume symbiosis: the role of plant immunity. Trends Plant Sci. 20:186-194.

SiwaretArikit, Rui Xia,AtulKakrana, Kun Huang, JixianZhai, Zhe Yan , Oswaldo Valdés-López, Theresa A. Musket, Henry T. Nguyen, Gary Stacey, Blake C. Meyers. (2014) An atlas of soybean small RNAs demonstrates regulation by phased siRNAs of hundreds of coding genes. Plant Cell (in press; available online)

Arikit S, Xia R, Kakrana A, Huang K, Zhai J, Yan Z, Valdés-López O, Prince S, Musket TA, Nguyen HT, et al (2014) An Atlas of Soybean Small RNAs Identifies Phased siRNAs from Hundreds of Coding Genes. Plant Cell tpc.114.131847

ArturMuszynski, Malcolm A. O’Neill, EaswaranRamasamy,SivakumarPattathil, Utku Avci, Maria J. Peña, Marc Libault, MdShakhawat Hossain,Laurent Brechenmacher, William S. York, Rommel M. Barbosa, Michael G.Hahn, Gary Stacey, and Russell W. Carlson (2015) Xyloglucan, galactomannan, glucuronoxylan, and rhamnogalacturonan Ido not have identical structures in soybean root and root hair cell walls. Glycobiology (in press)

Tanaka, K., K. Toth, G. Stacey (2013) Chapter 52. Role of ectoapyrases in nodulation. Wiley: Biological Nitrogen Fixation, 2 Volume Set - Frans J. de Bruijn.

Liang, Yan, KatalinTóth,Yangrong Cao, Kiwamu Tanaka, Catherine Espinoza and Gary Stacey (2014) Lipochitooligosaccharide recognition: an ancient story. New Phytol. 204(2):289-96

Medeiros-Silva M, Frank W, Borba MP,Pizatto SB, Strodman KN, Emerich DW, Stacey G, Polacco JC, Carlini CR (2014) Soybean ureases, but not that of Bradyrhizobiumjaponicum,are involved in nodulation. Journal of Agricultural and Food Chemistry 62: 3517-3524

Jun Wang, KatalinTóth, Zhe Yan, Kiwamu Tanaka, Laurent Brechenmacher, Jeremy Dahmen, Mingjie Chen, Jay J. Thelen, LijuanQiu, Gary Stacey (2013) A soybean Acyl Carrier Protein, GmACP, is important for root nodule symbiosis. Mol. Plant-Microbe Interactions,.Mol Plant-Microbe Int. 27: 415-423.

Trupti Joshi, Michael R. Fitzpatrick, Shiyuan Chen, Yang Liu, Hongxin Zhang, Ryan Z. Endacott, Eric C. Gaudiello, Gary Stacey, Henry T. Nguyen, Dong Xu(2014) Soybean Knowledge Base (SoyKB): A web resource for integration of soybean translational genomics and molecular breeding. Nucl. Acids Res. D1245-52. doi: 10.1093/nar/gkt905.

Zhe Yan, Yan Liang, Oswaldo Valdés-López, Jun Wang, Md Shakhawat Hossain, Marc Libault, Lijuan Qiu, Gary Stacey (2013) miR172 regulates soybean nodulation. Mol. Plant-Microbe Int.. 26: 1371-1377.

Valdés-López O, Khan SM, Schmitz RJ, Cui S, Qiu J, Joshi T, Xu D, Diers B, Ecker JR, Stacey G (2014) Genotypic variation of gene expression during the soybean innate immunity response. Plant Genetic Resources 12: S27–S30

Robert J. Schmitz, Yupeng He, Oswaldo Valdés López, Trupti Joshi, Mark A. Urich, Joseph R. Nery, Brian Diers, Dong Xu, Gary Stacey and Joseph R. Ecker (2013) Epigenome-wide inheritance of cytosine methylation variants in a recombinant inbred population. Genome Res. 23: 1663-1674

Zhu, Mingzhu, Dahmen, Jeremy, Stacey, Gary, Cheng, Jianlin (2013) Predicting gene regulatory networks of soybean nodulation from RNA-seq transcriptome data. BMC Bioinformatics 14:278 (22 September 2013)

Anne Roulin, Paul Auer, Marc Libault, Jessica Schlueter, Andrew Farmer, Greg May, Gary Stacey, Rebecca W. Doerge and Scott A. Jackson (2013) The fate of duplicated genes in a polyploidy plant genome. Plant Journal 73: 143–153.

Tiffany Langewisch, Hongxin Zhang, Ryan Vincent, Trupti Joshi, Dong Xu, Kristin Bilyeu. (2014) Major soybean maturity gene haplotypes revealed by SNPViz analysis of 72 sequenced soybean genomes. PLOS ONE. 9(4):e94150. DOI: 10.1371/journal.pone.0094150

Juexin Wang, Liang Chen, Yan Wang, Jingfen Zhang, Yanchun Liang, and Dong Xu. (2013) A computational systems biology study for understanding salt tolerance mechanism in rice. PLOS ONE, 8(6): e64929. doi:10.1371/journal.pone.0064929.

Trupti Joshi, Babu Valliyodan, Jeng-Hung Wu, Suk-Ha Lee, Dong Xu and Henry T. Nguyen. (2013) Genomic differences between cultivated soybean, G. max and its wild relative Glycine soja. BMC Genomics 14(Suppl 1):S5 doi:10.1186/1471-2164-14-S1-S5

Mingzhu Zhu, Xin Deng, Trupti Joshi, Dong Xu, Gary Stacey, Jianlin Cheng (2012) Reconstructing differentially co-expressed gene modules and regulatory networks of soybean cells. BMC Genomics 13:437 (31 August 2012)

Laurent Brechenmacher, Tran Hong Nha Nguyen, Kim Hixson, Marc Libault, Ljiljana Pasa-Tolic, Gary Stacey (2012) Identification of soybean proteins from a single cell type: the root hair. Proteomics 12: 3365–3373

Tran Hong Nha Nguyen, Laurent Brechenmacher, Joshua Aldrich, Therese Clauss, Marina Gritsenko, Kim Hixson, Marc Libault, Kiwamu Tanaka, Jun Wang, Qiuming Yao, Ljiljana Paša-Tolic, Dong Xu, Henry T. Nguyen and Gary Stacey (2012) Quantitative phosphoproteomic analysis of soybean root hair cells in response to inoculation withBradyrhizobium japonicum. Mol. Cell. Prot 11: 1140-1155.

Xue-Cheng Zhang, Zheng Wang, Mi Ha Le, Xinyan Zhang, Jianguo Sun, Dong Xu, Jianlin Cheng, and Gary Stacey (2012) Evolutionary dynamics of protein domain architecture in plants. BMC Evolutionary Biology 12:6

Trupti Joshi, Kapil Patil, Michael R. Fitzpatrick, Levi D. Franklin, Qiuming Yao, Zheng Wang, Marc Libault, Laurent Brechenmacher, Babu Valliyodan, Xiaolei Wu, Jianlin Cheng, Gary Stacey, Henry Nguyen, Dong Xu (2012) Soybean Knowledge Base (SoyKB): A Web Resource for Soybean Translational Genomics. BMC Genomics 13 (suppl. 1): S15

Jixian Zhai, Dong-Hoon Jeong, Emanuele De Paoli, Sunhee Park, Benjamin D. Rosen, Yupeng Li, Alvaro J. González, Zhe Yan, Scott A. Jackson, Gary Stacey, Doug R. Cook, Pamela J. Green, D. Janine Sherrier, and Blake C. Meyers (2011) microRNAs as Master Regulators of the Plant NB-LRR Defense Gene Family via the Production of Phased, Trans-acting siRNAs. Genes and Development 25: 2540-2553

Thomas H. Hohle, William L. Franck, Gary Stacey and Mark R. O’Brian (2011) A bacterial outer membrane channel for nutritional divalent metal ion transport. Proc. Natl. Acad, Sci. USA 108 (37) 15390-15395.

Libault, M, Govindarajulu, M., Berg, R.H., Ong, Y.T., Puricelli, K., Taylor, C.G., Xu, D., Stacey, G. (2011) A dual targeted soybean protein is essential forBradyrhizobium japonicum infection of soybean root hair and cortical cells. Mol. Plant-Microbe Int. 24: 1051-1060.Cover photo.

Libault, Marc, Stacey, Gary (2010) Evolution of FW2.2-Like and PLAC8 genes in eukaryotes. Plant Signaling and Behavior 5: 1-3

Libault, Marc, Brechenmacher, Laurent, Cheng, Jianlin, Xu, Dong, Stacey, Gary (2010) Root hair systems biology. Trends in Plant Science 15: 641-650.

Libault,Marc, Xue-Cheng Zhang, Manjula Govindarajulu, Yee Tsuey Ong, Laurent Brechenmacher, Jing Qiu, R. Howard Berg, Andrea Hurley-Sommer, Christopher G. Taylor, Gary Stacey (2010) A member of the highly conserved FWL (tomato FW2.2-like) gene family is essential for soybean nodule organogenesis. Plant Journal 62(5):852-864

Wang Z, Libault M, Joshi T, Valliyodan B, Nguyen HT, et al. 2010. SoyDB: A knowledge database of soybean transcription factors. BMC Plant Biology 10:14

Libault, Marc, Stacey, Gary (2010) Evolution of FW2.2-Like and PLAC8 genes in eukaryotes. Plant Signaling and Behavior 5: 1-3.

Libault, Marc, Andrew Farmer, Laurent Brechenmacher, Gregory D. May, Gary Stacey 2010) Soybean root hairs: a valuable system to investigate plant biology at the cellular level. Plant Signaling and Behavior 5:419-421

Schmutz J, Cannon SB, Schlueter J, Ma J, Mitros T, et al. 2010. Genome sequence of the paleopolyploid soybean (Glycine max (L.) Merr.). Nature 463: 178-183

Libault M, Farmer A, Joshi T, Takahashi K, Langley RJ, et al. 2010. An integrated transcriptome atlas of the crop model Glycine max and its use in comparative analysis in plants. Plant Journal 63: 86-99

Libault M, Farmer A, Brechenmacher L, Drnevich J, Langley RJ, et al. 2010. Complete transcriptome of the soybean root hair cell, a single cell model, and its alteration in response to Bradyrhizobium japonicum infection. Plant Physiol. 152: 541-52

Joshi T, Yan Z, Libault M, Jeong H, Park S, et al. 2010. Prediction of novel miRNAs and associated target genes in Glycine max. BMC Bioinformatics 11(Suppl 1): S14

Brechenmacher, L, Zhentian Lei, Marc Libault, Seth Findley, Masayuki Sugawara,Michael J Sadowsky, Lloyd W Sumner, and Gary Stacey (2010) Soybean metabolites regulated in root hairs in response to the symbiotic bacterium Bradyrhizobium japonicum. Plant J. 153: 1808-1822

Libault M, Joshi T, Takahashi K, Hurley-Sommer A, Puricelli K, et al. 2009. Large-scale analysis of putative soybean regulatory gene expression identifies a Myb gene involved in soybean nodule development. Plant Physiol 151: 1207-20

Libault M, Joshi T, Benedito VA, Xu D, Udvardi MK, Stacey G. 2009. Legume transcription factor genes: what makes legumes so special? Plant Physiol 151: 991-1001

Brechenmacher L, Lee J, Sachdev S, Song Z, Nguyen TH, et al. 2009. Establishment of a protein reference map for soybean root hair cells. Plant Physiol 149: 670-82

Joshi T, Yan Z, Libault M, Jeong H, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers B, Xu D, Stacey G (2009) “Prediction of novel miRNAs and associated target genes in Glycine max.” BMC Bioinformatics 11(Suppl 1):S14.

Zhang J, Subramanian S, Stacey G, Oliver Y (2009) “Flavones and flavanols play distinct, critical roles during nodulation of Medicago truncatula by Sinorhizobium meliloti.” Plant J. 57: p. 171.

Dalton DA, Boniface C, Turner Z, Lindahl A, Kim HJ, Jelinek L, Govindarajulu M, Finger RE, Taylor CG (2009) Physiological roles of glutathione s-transferases in soybean root nodules. Plant Physiol 150: 521–530

Brechenmacher L, Lee J, Sachdev S, Song Z, Nguyen THN, Trupti J, Dague B, Oehrle N, Libault M, Mooney B, Xu D, Cooper B, Stacey G (2009) “Establishment of a protein reference map for soybean root hair cells.” Plant Physiol. 149: p. 670.

Govindarajulu M, Kim SY, Libault M, Berg RH, Tanaka K, et al. 2009. GS52 ecto-apyrase plays a critical role during soybean nodulation. Plant Physiol 149: 994-1004

Govindarajulu M, Kim S-Y, Libault M, Berg RH, Tanaka K, et al. (2009) “GS52 ecto-apyrase plays a critical role during soybean nodulation.” Plant Physiol.: 149: p. 994.

Stacey G. Brechenmacher L, Libault M, Sachdev S (2008) Functional genomics of soybean root hair infection. IN “Biological Nitrogen Fixation: Towards Poverty Alleviation Through Sustainable Agriculture”; edited by Felix D. Dakora, Samson B.M. Chimphango, Alex J. Valentine, Claudine Emerich and William E. Newton, Springer Publ., The Netherlands, p. 181-182.

Brechenmacher L, Kim MY, Benitez M, Li M, Joshi T, Calla B, Lee MP, Libault M, Vodkin LO, Xu D, Lee SH, Clough SJ, Stacey G (2008) “Transcription profiling of soybean nodulation by Bradyrhizobium japonicum.” Molecular Plant-Microbe Interactions. 21: p. 631.

Govindarajulu M, Elmore JM, Fester T, Taylor CG. (2008) “Evaluation of constitutive viral promoters in transgenic soybean roots and nodules.” Molecular Plant-Microbe Interactions 21: p. 1027 (cover photo).

Libault M, Thibivilliers S, Radman O, Clough SJ, Stacey G (2008) “Identification of four soybean reference genes for gene expression normalization.” Plant Genome. 1: p. 44.

Veena V, Taylor C. 2007. Agrobacterium rhizogenes: recent developments and promising applications. In Vitro Cellular & Developmental Biology - Plant 43: 383-403

Song Z, Chen L, Ganapathy A, Wan X-F, Brechenmacher L, Tao N, Emerich D, Stacey G, Xu D (2007) “Development and assessment of scoring functions for protein identification using peptide mass fingerprinting data.” Electrophoresis 28: p. 864.

Subramanian S, Stacey G, Yu O (2007) "Distinct, critical roles of flavonoids during determinate and indeterminate legume nodulation." Trends in Plant Science 12: p. 282.

Song, Z., Chen, L, Ganapathy, A., Wan, X-F, Brechenmacher, L., Tao, N., Emerich, D., Stacey, G, Xu, Dong (2007) "Development and assessment of scoring functions for protein identification using peptide mass fingerprinting data.", Electrophoresis 28: p. 864.

Subramanian S, Stacey G, Yu Oliver 2006) "Endogenous isoflavones are essential for the establishment of symbiosis between soybean andBradyrhizobium japonicum", Plant Journal 48: p. 261.

Stacey, G, McAlvin, C.B., Kim, S-Y, Olivares, J., Soto, M.J. (2006) "Effects of endogenous salicylic acid on nodulation in the model legumes Lotus japonicusand Medicago truncatula.", Plant Physiol. 141: p. 1473.

Stacey G, Libault M, Brechenmacher L, Wan J, May GD (2006) "Genetics and functional genomics of legume nodulation.” Curr. Opin. Plant Biol. 9: p. 110.

Collier R, Fuchs B, Walter N, Lutke WK, Taylor CG. 2005. Ex vitro composite plants: an inexpensive, rapid method for root biology. The Plant Journal 43: 449-57

Wan, J., M. Torres, A. Ganapathy, J. Thelen, B. B. DaGue, B. Mooney, D. Xu, and G. Stacey. (2005) "Proteomic analysis of soybean root hairs after infection by Bradyrhizobium japonicum", Mol. Plant-Microbe Int. 18: p. 458.

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